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Sequence databases may be Fasta files, containing AA or NA sequences, for searching with Mascot, or MSP files, which are spectral libraries for searching with NIST MSPep Search.

The file formats and download locations of sequence databases change from time to time.

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See Doctrine's Reserved SQL keywords documentation for details on how to properly escape these names.

This is primarily to allow parse rules to be tested, but it also verifies that the download URL works or that the manually copied files have the correct names and security settings / permissions.

Drop-down help is provided for each element in the configuration pages.

For more information about major version upgrades, see the documentation for your DB engine listed following.

Minor version upgrades usually contain database changes that are backward-compatible with the previous version of the database.